Taylor Joren, Sarah a Robinson, Homa MohammadiPeyhani, Sai Pooja Mahajan, Edith Lee, Et Al. (2025). Guided Generation of B-cell Receptors with Conditional Walk-Jump Sampling. LMRL Workshop, ICLR.
Aya Abdelsalam Ismail, Tuomas Oikarinen, Amy Wang, Julius Adebayo, Samuel Stanton, Héctor Corrada Bravo, Taylor Joren, Et Al. (2025). Concept bottleneck language models for protein design. ICLR.
Nathan C Frey, Isidro Hötzel, Samuel D Stanton, Ryan Kelly, Robert G Alberstein, Emily K Makowski, Taylor Joren, Et Al. (2025). Lab-in-the-loop therapeutic antibody design with deep learning. bioRxiv.
Rohit Singh, Chiho Im, Yu Qiu, Brian Mackness, Abhinav Gupta, Taylor Joren, Samuel Sledzieski, Et Al. (2025). Learning the language of antibody hypervariability. PNAS.
Koseki J Kobayashi-Kirschvink, Charles S Comiter, Shreya Gaddam, Taylor Joren, Emanuelle I Grody, Et Al. (2024). Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA. Nat. Biotechnol..
Nathan C Frey, Taylor Joren, Aya Abdelsalam Ismail, Andrew Goodman, Richard Bonneau, Kyunghyun Cho, Et Al. (2024). Cramming protein language model training in 24 GPU hours. bioRxiv.
Saleh Riahi, Jae Hyeon Lee, Taylor Joren, Shuai Wei, Sophie Jager, Reza Olfati-Saber, Yanfeng Zhou, Et Al. (2023). Surface ID: a geometry-aware system for protein molecular surface comparison. Bioinformatics.
Taylor Joren (2021). Interpreting Raman spectra using machine learning: towards a non-invasive method of characterizing single cells. MIT.
Timo M Deist, Andrew Patti, Zhaoqi Wang, David Krane, Taylor Joren, David Craft (2019). Simulation-assisted machine learning. Bioinformatics.